owmeta_movement.cemee module¶

class owmeta_movement.cemee.CeMEEDataTranslator(*args, no_type_decl=False, **kwargs)[source]¶

Bases: owmeta_core.datasource.DataTranslator

Dealing with the CeMEE Multi-Worm Tracker entries.

See https://zenodo.org/record/4074963 for more.

output_type¶: alias of owmeta.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource

class owmeta_movement.cemee.CeMEEToWCON202007DataTranslator(*args, no_type_decl=False, **kwargs)[source]¶

Bases: owmeta_core.capable_configurable.CapableConfigurable, owmeta_core.datasource.DataTranslator

Corrects the pseudo-WCON format into a form compliant with the 2020/07 version of the WCON Schema

output_type¶: alias of owmeta_movement.wcon_ds.WCONDataSource

class owmeta_movement.cemee.CeMEEWCONDataSource(*args, no_type_decl=False, **kwargs)[source]¶

Bases: owmeta_core.data_trans.local_file_ds.LocalFileDataSource

A DataSource providing WCON from the CeMEE MWT dataset on Zenodo

wcon_contents()[source]¶: Return the wcon file contents

sample_zip_file_name¶: “sample_zip_file_name”, a DatatypeProperty: Name of the WCON zip within the archive file from the Zenodo record. Nominally, corresponds to a sample identified by its strain and a timestamp

class owmeta_movement.cemee.ZenodoCeMEEWCONDataSource(*args, no_type_decl=False, **kwargs)[source]¶

Bases: owmeta_movement.zenodo.ZenodoFileDataSource, owmeta_movement.cemee.CeMEEWCONDataSource

zenodo_base_urlDatatypeProperty

Attribute: zenodo_base_url

Base Zenodo URL. Should use the well-known site URL if this property is unavailable

zenodo_idDatatypeProperty

Attribute: zenodo_id

Record ID from Zenodo

zenodo_file_nameDatatypeProperty

Attribute: zenodo_file_name

Name of a file in a Zenodo record in zenodo_id

File nameDatatypeProperty

Attribute: file_name

Torrent file nameDatatypeProperty

Attribute: torrent_file_name

MD5 hashDatatypeProperty

Attribute: md5

SHA-256 hashDatatypeProperty

Attribute: sha256

SHA-512 hashDatatypeProperty

Attribute: sha512

Input sourceObjectProperty

Attribute: source

The data source that was translated into this one

TransformationObjectProperty

Attribute: transformation

Information about the transformation process that created this object

TranslationObjectProperty

Attribute: translation

Information about the translation process that created this object

DescriptionDatatypeProperty

Attribute: description

Free-text describing the data source

sample_zip_file_nameDatatypeProperty

Attribute: sample_zip_file_name

Name of the WCON zip within the archive file from the Zenodo record. Nominally, corresponds to a sample identified by its strain and a timestamp